Nonparametric method for identifying discordant phylogenetic trees

A non-parametric method for identifying potential outlying observations in a collection of phylogenetic trees based on the methods of Owen and Provan (2011). Such discordant trees may indicate problems with sequence annotation or tree reconstruction, or they may represent interesting biological phenomena, such as horizontal gene transfers.


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install.packages("kdetrees")

0.1.5 by Grady Weyenberg, 3 years ago


http://github.com/grady/kdetrees


Browse source code at https://github.com/cran/kdetrees


Authors: Grady Weyenberg and Ruriko Yoshida


Documentation:   PDF Manual  


Task views: Phylogenetics, Especially Comparative Methods


GPL-2 license


Imports ape, distory, ggplot2


See at CRAN