Identifying Trait-Relevant Functional Annotations

Using enrichment of genome-wide association summary statistics to identify trait-relevant cellular functional annotations.


Travis-CI Build Status

This package is meant to identify enrichment of SNP-trait association signal in functional annotations.

Install

At the moment, installation is easiest using the devtools package. The function devtools::install_github("dcalderon/rolypoly", build_vignettes = TRUE) will install the package and build vignettes.

Usage

I am in the process of writing tutorials for basic rolypoly functionality. For now see the introductory vignette by running vignette('intro', package = 'rolypoly').

Notes

  • Still in early alpha phase.

To Do

  • Continue alpha testing.

News

CHANGES IN rolypoly VERSION 0.1

NEW FEATURES

  • First version of rolypoly. See vignette for test run.

MISC

Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.

install.packages("rolypoly")

0.1.0 by Diego Calderon, a year ago


https://github.com/dcalderon/rolypoly


Report a bug at https://github.com/dcalderon/rolypoly/issues


Browse source code at https://github.com/cran/rolypoly


Authors: Diego Calderon


Documentation:   PDF Manual  


GPL-3 license


Imports data.table, dplyr, foreach, ggplot2, glmnet, MASS, Matrix, matrixcalc

Suggests CompQuadForm, knitr, testthat, rmarkdown


See at CRAN