Detecting Differentially Expressed Genes in Time Course RNA-Seq Data

Uses a negative binomial mixed-effects (NBME) model to detect nonparallel differential expression(NPDE) genes and parallel differential expression(PDE) genes in the time course RNA-seq data.


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install.packages("timeSeq")

1.0.3 by Fan Gao, 3 days ago


Browse source code at https://github.com/cran/timeSeq


Authors: Fan Gao, Xiaoxiao Sun


Documentation:   PDF Manual  


GPL (>= 2) license


Imports gss, lattice, pheatmap, reshape, grDevices, graphics

Suggests rmarkdown, knitr


See at CRAN