Pathway and Gene-Level Association Test

Pathway and gene level association test using raw data or summary statistics.


ARTP2

CRAN version CRAN RStudio mirror downloads

This R package is used for biological pathway analysis and pathway meta-analysis for genome-wide association studies. This is an enhanced version of ARTP on CRAN. An online application of ARTP2 is hosted at https://analysistools.nci.nih.gov/pathway/, where data from the 1000 Genomes Project is provided as genotype reference panel.

Reference manual

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install.packages("ARTP2")

0.9.45 by Bill Wheeler, 8 years ago


https://github.com/zhangh12/ARTP2


Report a bug at https://github.com/zhangh12/ARTP2/issues


Browse source code at https://github.com/cran/ARTP2


Authors: Han Zhang , Bill Wheeler , Kai Yu , Yifan Yang , R Core Team


Documentation:   PDF Manual  


GPL-2 | GPL-3 license


Imports Formula, parallel, data.table

Depends on stats, utils

Enhances ARTP

System requirements: C++11


See at CRAN