Pathway and Gene-Level Association Test

Pathway and gene level association test using raw data or summary statistics.

CRAN version CRAN RStudio mirror downloads

An enhanced R package of biological pathway analysis and pathway meta-analysis for genome-wide association studies.


v0.9.25 (2016-03-01)

  • Fix a bug in rARTP when none of the SNPs in a gene can pass the data cleaning threshold specified in options. This bug only affects rARTP. Add a new function exclude.snps

v0.9.22 (2016-02-11)

  • Rename the main functions to be rARTP (raw data input), sARTP (summary data input), and warm.start so that it is consistent with our journal paper

v0.9.21 (2016-02-11)

  • First stable submission to CRAN

Reference manual

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0.9.44 by Bill Wheeler, 13 days ago

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Browse source code at

Authors: Han Zhang, Bill Wheeler, Kai Yu, Yifan Yang, R Core Team

Documentation:   PDF Manual  

GPL-2 | GPL-3 license

Imports Formula, parallel, data.table

Depends on stats, utils

Enhances ARTP

System requirements: C++11

See at CRAN