Pathway and Gene-Level Association Test

Pathway and gene level association test using raw data or summary statistics.


An enhanced R package of biological pathway analysis and pathway meta-analysis for genome-wide association studies.

News

  • Fix a bug in rARTP when none of the SNPs in a gene can pass the data cleaning threshold specified in options. This bug only affects rARTP. Add a new function exclude.snps
  • Rename the main functions to be rARTP (raw data input), sARTP (summary data input), and warm.start so that it is consistent with our journal paper
  • First stable submission to CRAN

Reference manual

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install.packages("ARTP2")

0.9.32 by Han Zhang, 3 days ago


https://github.com/zhangh12/ARTP2


Report a bug at https://github.com/zhangh12/ARTP2/issues


Browse source code at https://github.com/cran/ARTP2


Authors: Han Zhang, Bill Wheeler, Kai Yu, Yifan Yang, R Core Team


Documentation:   PDF Manual  


GPL-2 | GPL-3 license


Depends on Formula, data.table, stats, utils, parallel

System requirements: C++11


See at CRAN