Post-Processing of the Markov Chain Simulated by 'ChronoModel', 'Oxcal' or 'BCal'

Provides a list of functions for the statistical analysis of archaeological dates and groups of dates. It is based on the post-processing of the Markov Chains whose stationary distribution is the posterior distribution of a series of dates. Such output can be simulated by different applications as for instance 'ChronoModel' (see < http://www.chronomodel.fr>), 'Oxcal' (see < https://c14.arch.ox.ac.uk/oxcal.html>) or 'BCal' (see < http://bcal.shef.ac.uk/>). The only requirement is to have a csv file containing a sample from the posterior distribution.


News

NEWS

============== ArchaeoPhases 1.3 (Release date: 2017-09-05)

  • Includes an update of the function ImportCSV and a new function for BCal users called ImportCSV.BCal

  • Includes an update of the MultiDatesPlot. The graphic is now done with ggplot2

  • Includes an update of the TempoPlot and TempoActivityPlot functions

  • Includes a new function : OccurrencePlot

  • Includes an update of the vignette that describes the main functions of the package

  • Includes an update of the shiny web application (called by function app_ArchaeoPhases())

============== ArchaeoPhases 1.2 (Release date: 2017-06-12)

  • Includes an update of the vignette that describes the main functions of the package

  • Includes an update of the shiny web application (called by function app_ArchaeoPhases())

============== ArchaeoPhases 1.1 (Release date: 2017-03-28)

  • Includes a vignette that describes the main functions of the package

  • Includes an update of the ImportCSV function in order to import the raw MCMC generated by 'BCal' and to convert the MCMC samples from the date format cal BP (in years before 1950) to the date format BC/AD

  • Includes a new dataset of MCMC samples generated by BCal : Fishpond.RData

  • Includes an update of the coda.mcmc function

  • Includes an update of the TempoPlot function using the package 'ggplot2'

  • Includes an update of all graphic functions : it is now possible to export all graphics and to choose the colors associated to the characteristics of groups of dates.

  • Includes an update of the shiny web application (called by function app_ArchaeoPhases())

============== ArchaeoPhases 1.0 (Release date: 2017-02-06)

  • Initial release

  • Includes all functions of RChronoModel and their updates

  • Includes a function coda.mcm() that creates a MCMC_list in order to use the package 'coda'

  • Includes a shiny application and the function app_ArchaeoPhases() to call it from R

  • RChronoModel is now obsolete and replaced by ArchaeoPhases

Reference manual

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install.packages("ArchaeoPhases")

1.3 by Anne Philippe, 9 months ago


Report a bug at https://github.com/marieannevibet/ArchaeoPhases/issues


Browse source code at https://github.com/cran/ArchaeoPhases


Authors: Anne Philippe [aut, cre], Marie-Anne Vibet [aut], Thomas S. Dye [ctb]


Documentation:   PDF Manual  


GPL-3 license


Imports stats, utils, graphics, grDevices, shiny, shinythemes, DT, readr, ggthemes, toOrdinal, ggplot2, ggalt

Depends on coda, hdrcde

Suggests knitr, rmarkdown


Imported by BayLum.

Depended on by ArchaeoChron.


See at CRAN