DMR Detection by Non-Homogeneous Hidden Markov Model from Methylation Array Data

Perform differential analysis for methylation array data. Detect differentially methylated regions (DMRs) from array M-values. The core is a Non-homogeneous Hidden Markov Model for estimating spatial correlation and a novel Constrained Gaussian Mixture Model for modeling the M-value pairs of each individual locus.


News

Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.

install.packages("DMRMark")

1.1.1 by Linghao SHEN, a month ago


Browse source code at https://github.com/cran/DMRMark


Authors: Linghao SHEN <sl013@ie.cuhk.edu.hk>


Documentation:   PDF Manual  


GPL license


Depends on MCMCpack, mvtnorm, ellipse


See at CRAN