Finds RNASeq Source Tissues Using In Situ Hybridisation Data

Finds the most likely originating tissue(s) and developmental stage(s) of tissue-specific RNA sequencing data. The package identifies both pure transcriptomes and mixtures of transcriptomes. The most likely identity is found through comparisons of the sequencing data with high-throughput in situ hybridisation patterns. Typical uses are the identification of cancer cell origins, validation of cell culture strain identities, validation of single-cell transcriptomes, and validation of identity and purity of flow-sorting and dissection sequencing products.


Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.

install.packages("cellOrigins")

0.1.3 by David Molnar, 6 years ago


Browse source code at https://github.com/cran/cellOrigins


Authors: David Molnar


Documentation:   PDF Manual  


CC BY-NC-SA 4.0 license


Imports iterpc


See at CRAN