Chlorophyll Fluorescence (Fv/Fm) Analysis of Leaf Disc Images

Semi-automated analysis of chlorophyll fluorescence images of leaf discs taken with a 'Walz' 'IMAGING-PAM' fluorometer. Provides an R interface to the 'fvfmPy' 'Python' package, which detects leaf discs, assigns them to a grid of rows and columns, and computes the maximum quantum efficiency of photosystem II, Fv/Fm = (Fm - Fo) / Fm, for each disc. The interactive 'fvfmPy' window is launched from R and the results are returned to R as a data frame.


Reference manual

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install.packages("fvfmR")

1.0.0 by Pieter Arnold, 12 hours ago


https://github.com/garenj/fvfmR, https://github.com/garenj/fvfmPy


Report a bug at https://github.com/garenj/fvfmR/issues


Browse source code at https://github.com/cran/fvfmR


Authors: Josef Garen [aut, cph] , Pieter Arnold [aut, cre, cph] , Kristine Crous [aut, cph]


Documentation:   PDF Manual  


MIT + file LICENSE license


Imports reticulate, utils

Suggests testthat

System requirements: Python (>= 3.10), fvfmPy (>= 1.0.0)


See at CRAN