An Open-Source Loader for Bruker's timsTOF Data Files

Reads raw data from Bruker's timsTOF mass spectrometers, stored in analysis.tdf and analysis.tdf_bin files inside .d folders. Frames can be selected by number or by retention time, and each peak is reported with its scan, time-of-flight index, intensity, mass-to-charge ratio and inverse ion mobility. Mass-to-charge ratios and ion mobilities are computed with built-in open-source calibration, or optionally with Bruker's proprietary library. See Łącki et al. (2021) .


Reference manual

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install.packages("opentimsr")

1.2.0 by Mateusz Krzysztof Łącki, 6 hours ago


https://github.com/michalsta/opentims


Report a bug at https://github.com/michalsta/opentims/issues


Browse source code at https://github.com/cran/opentimsr


Authors: Michał Piotr Startek [aut, cph] (ORCID: , Mateusz Krzysztof Łącki [aut, cre, cph] (ORCID: , mandreyel [ctb, cph] (Author and copyright holder of the bundled 'mio' library (https://github.com/mandreyel/mio))


Documentation:   PDF Manual  


MIT + file LICENSE license


Imports Rcpp, methods, DBI, RSQLite

Suggests testthat

Linking to Rcpp

System requirements: C++20, libzstd


See at CRAN