Simulate Somatic Mutations in Cancer Genomes from Mutational Processes

Simulates somatic single base substitutions carried in cancer genomes. By only providing a human reference genome, substitutions that result from mutational processes operative in every cancer genome can be generated.


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install.packages("simMP")

0.17.3 by Nan Zhou, 4 days ago


Browse source code at https://github.com/cran/simMP


Authors: Nan Zhou


Documentation:   PDF Manual  


GPL-2 license


Imports Biostrings, BSgenome, GenomeInfoDb, GenomicRanges, IRanges, XVector

Depends on doParallel, utils, foreach, parallel, stats

Suggests BSgenome.Hsapiens.UCSC.hg38


See at CRAN