Functions to Work with NCBI Accessions and Taxonomy

Functions for assigning taxonomy to NCBI accession numbers and taxon IDs based on NCBI's accession2taxid and taxdump files. This package allows the user to download NCBI data dumps and create a local database for fast and local taxonomic assignment.


Reference manual

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install.packages("taxonomizr")

0.11.1 by Scott Sherrill-Mix, 2 years ago


https://github.com/sherrillmix/taxonomizr/


Report a bug at https://github.com/sherrillmix/taxonomizr/issues


Browse source code at https://github.com/cran/taxonomizr


Authors: Scott Sherrill-Mix [aut, cre]


Documentation:   PDF Manual  


GPL (>= 2) | file LICENSE license


Imports RSQLite, R.utils, data.table, curl

Suggests testthat, knitr, rmarkdown


Imported by DBTC.


See at CRAN