Functions to Work with NCBI Accessions and Taxonomy

Functions for assigning taxonomy to NCBI accession numbers and taxon IDs based on NCBI's accession2taxid and taxdump files. This package allows the user to downloads NCBI data dumps and create a local database for fast and local taxonomic assignment.


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install.packages("taxonomizr")

0.2.2 by Scott Sherrill-Mix, 3 months ago


Browse source code at https://github.com/cran/taxonomizr


Authors: Scott Sherrill-Mix [aut, cre]


Documentation:   PDF Manual  


GPL-2 license


Imports parallel, RSQLite, data.table, R.utils

Suggests testthat, knitr, rmarkdown


See at CRAN