Functions to Work with NCBI Accessions and Taxonomy

Functions for assigning taxonomy to NCBI accession numbers and taxon IDs based on NCBI's accession2taxid and taxdump files. This package allows the user to downloads NCBI data dumps and create a local database for fast and local taxonomic assignment.


Reference manual

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0.2.2 by Scott Sherrill-Mix, 8 months ago

Browse source code at

Authors: Scott Sherrill-Mix [aut, cre]

Documentation:   PDF Manual  

GPL-2 license

Imports parallel, RSQLite, data.table, R.utils

Suggests testthat, knitr, rmarkdown

See at CRAN