Estimation of Cell Infiltration Based on Cell Crosstalk

A systematic biology tool was developed to identify cell infiltration via Individualized Cell-Cell interaction network. 'CITMIC' first constructed a weighted cell interaction network through integrating Cell-target interaction information, molecular function data from Gene Ontology (GO) database and gene transcriptomic data in specific sample, and then, it used a network propagation algorithm on the network to identify cell infiltration for the sample. Ultimately, cell infiltration in the patient dataset was obtained by normalizing the centrality scores of the cells.


Reference manual

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install.packages("CITMIC")

0.1.3 by Junwei Han, a year ago


Browse source code at https://github.com/cran/CITMIC


Authors: Junwei Han [aut, cre, cph] , Xilong Zhao [aut]


Documentation:   PDF Manual  


GPL (>= 2) license


Imports fastmatch, igraph, parallel, stats

Suggests knitr, rmarkdown


See at CRAN