Classes and Methods for "Class Comparison" Problems on Microarrays

Defines the classes used for "class comparison" problems in the OOMPA project (< http://oompa.r-forge.r-project.org/>). Class comparison includes tests for differential expression; see Simon's book for details on typical problem types.


News

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*	       3.1 SERIES NEWS			 *
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	CHANGES IN R VERSION 3.1.0

ADMINISTRATIVE

o	Changed the LICENSE to Apache 2.0.

	CHANGES IN R VERSION 3.0.1

GENERAL

o	Moved to R-Forge.

BUG FIXES

o	Made compatible with new R check steps that verify DESCRIPTION
    and NAMESPACE dependencies.

	CHANGES IN R VERSION 3.0.0

STRUCTURAL CHANGES

o	Removed dependence on PreProcess.


	CHANGES IN R VERSION 2.15.0

BUG FIXES

o	Documentation updates.


	CHANGES IN R VERSION 2.14.0

NEW FEATURES

o	Compatibility changes related to R-2.14.


	CHANGES IN R VERSION 2.12.0

NEW FEATURES

o	Added regression tests to support code maintenance; no
    user-visible changes.


	CHANGES IN R VERSION 2.10.1

NEW FEATURES

o	Moved matrix operations into oompaBase package to simplify
    other package dependencies.


	CHANGES IN R VERSION 2.10.0

NEW FEATURES

o	Checked compatibility with R 2.10.0.


	CHANGES IN R VERSION 2.9.0

NEW FEATURES

o	Added support for namespaces

BUG FIXES

o	Changed 'matrixMean', 'matrixVar', 'matrixT', and 'MultiTtest'
    to allow them to give sensible results in the face of  missing
    data.  Each function now has an additional argument, 'na.rm'
    which defaults to 'FALSE' for the matrix functions and to
    'TRUE' for the 'MultiTtest' function.

o   Changed the names of matrix functions for t-test variants to
    conform to capitalization conventions. Specifically, changed
    from 'matrixpairedT' to 'matrixPairedT' and from
    'matrixunequalT' to 'matrixUnequalT'.

Reference manual

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install.packages("ClassComparison")

3.1.6 by Kevin R. Coombes, 5 months ago


http://oompa.r-forge.r-project.org/


Browse source code at https://github.com/cran/ClassComparison


Authors: Kevin R. Coombes


Documentation:   PDF Manual  


Apache License (== 2.0) license


Imports methods, graphics, stats, splines, Biobase

Depends on oompaBase


Depended on by Modeler.


See at CRAN