Packages by Kevin R. Coombes

BimodalIndex — 1.1.11

The Bimodality Index

ClassComparison — 3.3.5

Classes and Methods for "Class Comparison" Problems on Microarrays

ClassDiscovery — 3.4.8

Classes and Methods for "Class Discovery" with Microarrays or Proteomics

CloneSeeker — 1.0.13

Seeking and Finding Clones in Copy Number and Sequencing Data

CrossValidate — 2.3.5

Classes and Methods for Cross Validation of "Class Prediction" Algorithms

GenAlgo — 2.2.1

Classes and Methods to Use Genetic Algorithms for Feature Selection

Mercator — 1.1.6

Clustering and Visualizing Distance Matrices

Modeler — 3.4.8

Classes and Methods for Training and Using Binary Prediction Models

NameNeedle — 1.2.8

Using Needleman-Wunsch to Match Sample Names

NewmanOmics — 1.0.14

Extending the Newman Studentized Range Statistic to Transcriptomics

PCDimension — 1.1.14

Finding the Number of Significant Principal Components

Polychrome — 1.5.4

Qualitative Palettes with Many Colors

PreProcess — 3.1.9

Basic Functions for Pre-Processing Microarrays

RCytoGPS — 1.2.9

Using Cytogenetics Data in R

RPointCloud — 0.8.0

Visualizing Topological Loops and Voids

SIBERG — 2.0.4

Systematic Identification of Bimodally Expressed Genes Using RNAseq Data

SillyPutty — 0.4.2

Silly Putty Clustering

TailRank — 3.2.4

The Tail-Rank Statistic

Thresher — 1.1.5

Threshing and Reaping for Principal Components

Umpire — 2.0.11

Simulating Realistic Gene Expression and Clinical Data

WayFindR — 0.3.1

Computing Graph Structures on WikiPathways

integIRTy — 1.0.8

Integrating Multiple Modalities of High Throughput Assays Using Item Response Theory

oompaBase — 3.2.10

Class Unions, Matrix Operations, and Color Schemes for OOMPA

oompaData — 3.1.5

Data to Illustrate OOMPA Algorithms

plasma — 1.1.4

Partial LeAst Squares for Multiomic Analysis