Identify Individuals with Unusual Geo-Genetic Patterns

Identify and visualize individuals with unusual association patterns of genetics and geography using the approach of Chang and Schmid (2023) . It detects potential outliers that violate the isolation-by-distance assumption using the K-nearest neighbor approach. You can obtain a table of outliers with statistics and visualize unusual geo-genetic patterns on a geographical map. This is useful for landscape genomics studies to discover individuals with unusual geography and genetics associations from a large biological sample.


Reference manual

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install.packages("GGoutlieR")

1.0.2 by Che-Wei Chang, 3 years ago


Browse source code at https://github.com/cran/GGoutlieR


Authors: Che-Wei Chang [aut, cre] , Karl Schmid [ths]


Documentation:   PDF Manual  


MIT + file LICENSE license


Imports stats4, FastKNN, foreach, doParallel, parallel, scales, RColorBrewer, ggforce, rlang, stats, tidyr, utils, rnaturalearth, sf, ggplot2, cowplot

Suggests rnaturalearthdata


See at CRAN