Genetic Class Association Testing

Implementation of the genetic class level association testing (GenCAT) method from SNP level association data. Refer to: "Qian J, Nunez S, Reed E, Reilly MP, Foulkes AS (2016) A Simple Test of Class-Level Genetic Association Can Reveal Novel Cardiometabolic Trait Loci. PLoS ONE 11(2): e0148218".


Reference manual

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1.0.3 by Eric Reed, 2 years ago

Browse source code at

Authors: Eric Reed, Sara Nunez, Jing Qian, Andrea Foulkes

Documentation:   PDF Manual  

GPL-2 license

Depends on stats, dplyr, doParallel, ggplot2, foreach, parallel, methods

Suggests snpStats, knitr

See at CRAN