EDGE Taxonomy Assignments Visualization

Implements routines for metagenome sample taxonomy assignments collection, aggregation, and visualization. Accepts the EDGE-formatted output from GOTTCHA/GOTTCHA2, BWA, Kraken, and MetaPhlAn. Produces SVG and PDF heatmap-like plots comparing taxa abundances across projects.


Reference manual

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1.0.1 by Pavel Senin, 9 months ago


Report a bug at https://github.com/seninp-bioinfo/MetaComp/issues

Browse source code at https://github.com/cran/MetaComp

Authors: Pavel Senin [aut, cre]

Documentation:   PDF Manual  

GPL-2 license

Imports reshape2, plyr, dplyr, data.table, ggplot2, Cairo

Suggests testthat

See at CRAN