EDGE Taxonomy Assignments Visualization

Implements routines for metagenome sample taxonomy assignments collection, aggregation, and visualization. Accepts the EDGE-formatted output from GOTTCHA/GOTTCHA2, BWA, Kraken, and MetaPhlAn. Produces SVG and PDF heatmap-like plots comparing taxa abundances across projects.


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install.packages("MetaComp")

1.0.1 by Pavel Senin, 3 months ago


https://github.com/seninp-bioinfo/MetaComp


Report a bug at https://github.com/seninp-bioinfo/MetaComp/issues


Browse source code at https://github.com/cran/MetaComp


Authors: Pavel Senin [aut, cre]


Documentation:   PDF Manual  


GPL-2 license


Imports reshape2, plyr, dplyr, data.table, ggplot2, Cairo

Suggests testthat


See at CRAN