NanoString nCounter data are gene expression assays
where there is no need for the use of enzymes or amplification
protocols and work with fluorescent barcodes (Geiss et al. (2018)
R/summarise.R
, put example in if (interactive()) {...}
instead of \dontrun{...}
.R/normalise.R
, put example in if (interactive()) {...}
instead of \dontrun{...}
.R/visualise.R
, put example in if (interactive()) {...}
instead of \dontrun{...}
.DESCRIPTION
and README
, description updated for CRAN, by adding "messenger-RNA/micro-RNA".R/normalise.R
, add short running example for normalise()
.R/visualise.R
, add short running example for visualise()
.DESCRIPTION
, description updated for CRAN, by removing some capital letters
and put NACHO between single quotes.DESCRIPTION
, title and description updated for CRAN.DESCRIPTION
and vignetteDESCRIPTION
, title and description updated for CRAN.summarise()
imports and pre-process RCC files.normalise()
allows to change settings used in summarise()
and exclude outliers.visualise()
allows customisation of the quality thresholds.summarise()
, ssheet_csv
can take a data.frame or a csv file.normalise()
(and internal functions).visualise()
replaces the Shiny app.summarise()
and normalise()
(and all internal functions).