An implementation for association analysis with CNV data.

An implementation for association analysis with CNV data in R. It provides two methods for association study: first, the observed probe intensity measurement can be directly used to detect the association of CNV with phenotypes of interest. Second, the most probable copy number is estimated with the proposed likelihood and the association of the most probable copy number with phenotype is tested. This method can be applied to both the independent and correlated population.


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install.packages("PedCNV")

0.1 by Meiling Liu, 4 years ago


https://github.com/rksyouyou/PedCNV


Browse source code at https://github.com/cran/PedCNV


Authors: Meiling Liu, Sungho Won and Weicheng Zhu


Documentation:   PDF Manual  


MIT + file LICENSE license


Depends on Rcpp, RcppArmadillo, ggplot2

Linking to Rcpp, RcppArmadillo


See at CRAN