Adaptive Generalized PCA

Implements adaptive gPCA, as described in: Fukuyama, J. (2017) . The package also includes functionality for applying the method to 'phyloseq' objects so that the method can be easily applied to microbiome data and a 'shiny' app for interactive visualization.


News

Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.

install.packages("adaptiveGPCA")

0.1.1 by Julia Fukuyama, 2 months ago


Browse source code at https://github.com/cran/adaptiveGPCA


Authors: Julia Fukuyama [aut, cre]


Documentation:   PDF Manual  


AGPL-3 license


Imports ape, ggplot2, shiny, phyloseq

Suggests knitr, rmarkdown


Suggested by treeDA.


See at CRAN