Bayesian Multilevel Mediation

Easy estimation of Bayesian multilevel mediation models with Stan.

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bmlm is an R package providing convenient methods for Bayesian estimation of multilevel mediation models using Stan.

The package’s source code is hosted on GitHub. More information can be found on the bmlm’s website.



Please ensure you have the latest version of R installed. Windows users may need to install RTools (more information on the RStan website), OS X users may need to install XCode (more information).

Install from CRAN

To install the latest stable version of bmlm from CRAN, run


Install from GitHub

Sometimes the stable version on CRAN is not the latest version of bmlm. bmlm is developed on GitHub, and users may obtain the latest (development) version from GitHub directly.

The latest development version of bmlm requires devtools for installation. If you don’t have the devtools package installed in R, first run this line:


Then proceed to install bmlm from GitHub:

devtools::install_github("mvuorre/bmlm", args = "--preclean")


Please contact the author of the package for questions and suggestions. I recommend creating a new issue on GitHub.


If you use this software, please cite it:

#> To cite package bmlm in publications, please use:
#>   Vuorre, M., (2017). bmlm: Bayesian Multilevel Mediation. R
#>   package version 1.3.4.
#> A BibTeX entry for LaTeX users is
#>   @Manual{,
#>     title = {bmlm: Bayesian Multilevel Mediation},
#>     author = {Matti Vuorre},
#>     year = {2017},
#>     url = {},
#>   }


bmlm 1.3.11

Fix package for staged installation

bmlm 1.3.9

  • Fix NOTE about methods package

bmlm 1.3.8

  • Update to C++14, thanks to Ben Goodrich.

bmlm 1.3.7

  • Removed tab2doc(), package no longer needs archived ReporteRs package.

bmlm 1.3.6

  • Deprecate tab2doc() because required package ReporteRs is archived.

bmlm 1.3.5

  • Fix (harmless) constructor error message

bmlm 1.3.4

  • Minor cleaning of Stan code
  • Fix typos in documentation

bmlm 1.3.3

  • Change the label '%me' to 'pme' (for proportion mediated effect) in output of mlm_path_plot(..., text = TRUE).

bmlm 1.3.2

  • Add options to mlm_spaghetti_plot() to allow jittering and adjusting size of the error bars.

bmlm 1.3.1

  • mlm_spaghetti_plot() now has argument mx which can be set to mx = "data" to plot the spaghetti plot of the M - Y relationship (b path) such that the X values are from data, and not fitted values from the X - M model (a path). The argument defaults to mx = "fitted", such that the X axis values of the M - Y spaghetti plot are fitted values.

bmlm 1.3.0

  • New function mlm_spaghetti_plot() for visualizing model-fitted values for paths a (X->M regression) and b (M->Y regression)

bmlm 1.2.10

  • Default priors are now $Normal(0, 1000)$ for regression coefficients, and $Cauchy(0, 50)$ for group-level SDs
  • mlm_summary() now gives only population level parameters by default, and group-level parameters when pars = "random"
  • Renamed the mediated effect parameter to me to distinguish it from the product of a and b (similarly for group-level u_me)
  • mlm_path_plot() now draws a template if no model is entered (i.e. template argument is deprecated)
  • mlm_path_plot() now by default also shows SDs of group-level effects. This behavior can be turned off by specifying random = FALSE
  • The fitted model object doesn't contain the whole covariance matrix anymore, but now contains the group-level intercepts
  • New example data set included in package: MEC2010
  • Posterior standard deviation is now referred to as SE in mlm_summary()

bmlm 1.2.9

Removed sigma_y from being modeled when binary_y = TRUE.

bmlm 1.2.1

Removed posterior probabilities from default outputs.

Added type = "violin" as option for plotting coefficients with mlm_pars_plot().

bmlm 1.2.0

Users may now change each individual regression parameter's prior, instead of classes of priors.

Users may now change the shape parameter of the LKJ prior.

bmlm 1.1.1

Coefficient plots now reorder parameter estimates, if user has requested varying effects.

Path plot now by default does not scale the edges.

bmlm 1.1.0

Major update

bmlm now uses pre-compiled C++ code for the Stan models, which eliminates the need to compile a model each time mlm() is run. This significantly speeds up model estimation.

Minor update

The Stan code used by mlm() is now built from separate chunks, allowing more flexible and robust model development.

bmlm 1.0.0

Initial release to CRAN.

Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.


1.3.11 by Matti Vuorre, 4 months ago

Report a bug at

Browse source code at

Authors: Matti Vuorre [aut, cre]

Documentation:   PDF Manual  

GPL (>= 3) license

Imports rstan, ggplot2, methods

Depends on Rcpp

Suggests qgraph, knitr, rmarkdown, reshape2, dplyr

Linking to StanHeaders, rstan, BH, Rcpp, RcppEigen

System requirements: GNU make

See at CRAN