Object-Oriented Implementation of Dose Escalation Designs

Implements a wide range of dose escalation designs. The focus is on model-based designs, ranging from classical and modern continual reassessment methods (CRMs) based on dose-limiting toxicity endpoints to dual-endpoint designs taking into account a biomarker/efficacy outcome. Bayesian inference is performed via MCMC sampling in JAGS, and it is easy to setup a new design with custom JAGS code. However, it is also possible to implement 3+3 designs for comparison or models with non-Bayesian estimation. The whole package is written in a modular form in the S4 class system, making it very flexible for adaptation to new models, escalation or stopping rules. Further details are presented in Sabanés Bové et al. (2019) .


Reference manual

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install.packages("crmPack")

2.2.1 by Daniel Sabanés Bové, 2 months ago


https://docs.crmpack.org/


Report a bug at https://github.com/openpharma/crmPack/issues


Browse source code at https://github.com/cran/crmPack


Authors: Daniel Sabanés Bové [aut, cre] (ORCID: , Wai Yin Yeung [aut] , Burak Kuersad Guenhan [aut] , Giuseppe Palermo [aut] , Thomas Jaki [aut] , Jiawen Zhu [aut] , Ziwei Liao [aut] , Dimitris Kontos [aut] , Marlene Schulte-Goebel [aut] , Doug Kelkhoff [aut] , Oliver Boix [aut] , Robert Adams [aut] , Clara Beck [aut] , John Kirkpatrick [aut] , Wojciech Wójciak [aut] , Guanya Peng [aut] , Prerana Chandratre [aut] , F. Hoffmann-La Roche AG [cph, fnd] , Merck Healthcare KGaA [cph, fnd] , Bayer AG [cph, fnd] , RPACT GmbH [cph, fnd]


Documentation:   PDF Manual  


GPL (>= 2) license


Imports checkmate, dplyr, futile.logger, GenSA, gridExtra, kableExtra, knitr, lifecycle, magrittr, methods, mvtnorm, parallel, parallelly, Rdpack, rjags, rlang, survival, tibble, tidyselect, tools, utils

Depends on ggplot2, graphics

Suggests bookdown, broom, covr, data.tree, DiagrammeR, ggmcmc, quarto, rmarkdown, stringr, testthat, tidyr, vdiffr, withr


See at CRAN