A Comprehensive, General Purpose Population Genetics Analysis Package

Allows the calculation of both genetic diversity partition statistics, genetic differentiation statistics, and locus informativeness for ancestry assignment. It also provides users with various option to calculate bootstrapped 95\% confidence intervals both across loci, for pairwise population comparisons, and to plot these results interactively. Parallel computing capabilities and pairwise results without bootstrapping are provided. Also calculates F-statistics from Weir and Cockerham (1984). Various plotting features are provided, as well as Chi-square tests of genetic heterogeneity. Functionality for the calculation of various diversity parameters is possible for RAD-seq derived SNP data sets containing thousands of marker loci. A shiny application for the development of microsatellite multiplexes is also available.


Reference manual

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1.9.90 by Kevin Keenan, 6 months ago


Browse source code at https://github.com/cran/diveRsity

Authors: Kevin Keenan <kkeenan02@qub.ac.uk>

Documentation:   PDF Manual  

GPL (>= 2) license

Imports ggplot2, shiny, qgraph, Rcpp, methods, stats, grid

Suggests xlsx, sendplot, plotrix, parallel, HWxtest

Linking to Rcpp

Suggested by FinePop.

See at CRAN