Functions for Drawing Gapped Cluster Heatmap with ggplot2

The gap encodes the distance between clusters and improves interpretation of cluster heatmaps. The gaps can be of the same distance based on a height threshold to cut the dendrogram. Another option is to vary the size of gaps based on the distance between clusters.


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install.packages("gapmap")

0.0.4 by Ryo Sakai, 2 years ago


https://bitbucket.org/vda-lab/gapmap


Browse source code at https://github.com/cran/gapmap


Authors: Ryo Sakai


Documentation:   PDF Manual  


GPL-2 | GPL-3 license


Imports grid

Depends on ggplot2, reshape2

Suggests knitr, dendsort, RColorBrewer


Suggested by dendsort.


See at CRAN