Quantification of Pinned Microbial Cultures

The goal of this package is to allow users to robustly and quickly grid and quantify sizes of pinned colonies in plate images. gitter works by first finding the grid of colonies from a preprocessed image and then locating the bounds of each colony separately. It includes several image pre-processing techniques, such as autorotation of plates, noise removal, contrast adjustment and image resizing.


News

Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.

install.packages("gitter")

1.1.1 by Omar Wagih, 2 years ago


Browse source code at https://github.com/cran/gitter


Authors: Omar Wagih, Leopold Parts


Documentation:   PDF Manual  


LGPL license


Imports jpeg, tiff, logging, PET, ggplot2, EBImage


See at CRAN