Maximum Likelihood Analysis of Animal Movement Behavior Using Multivariate Hidden Markov Models

Extended tools for analyzing telemetry data using generalized hidden Markov models. These include data pre-processing and visualization, fitting HMMs to location and auxiliary biotelemetry or environmental data, biased and correlated random walk movement models, multiple imputation for incorporating location measurement error and missing data, user-specified design matrices and constraints for covariate modelling of parameters, decoding of the state process, visualization of fitted models, model checking and selection, and simulation. See McClintock and Michelot (2017) .


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install.packages("momentuHMM")

1.3.0 by Brett McClintock, a month ago


Browse source code at https://github.com/cran/momentuHMM


Authors: Brett McClintock, Theo Michelot


Documentation:   PDF Manual  


GPL-3 license


Imports Rcpp, doParallel, foreach, numDeriv, CircStats, crawl, ggmap, ggplot2, mitools, moveHMM, raster, argosfilter, car, mvtnorm, boot, sp, MASS, Brobdingnag, gstat, conicfit, nleqslv, survival, qdapRegex, geosphere, LaplacesDemon

Suggests testthat, setRNG, knitr, splines, splines2

Linking to Rcpp, RcppArmadillo


See at CRAN