Flexible Simulations of Biological Sequence Evolution

An extensible object-oriented framework for the Monte Carlo simulation of sequence evolution written in 100 percent R. It is built on the top of the R.oo and ape packages and uses Gillespie's direct method to simulate substitutions, insertions and deletions.


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install.packages("phylosim")

3.0.2 by Botond Sipos, a year ago


https://github.com/bsipos/phylosim


Browse source code at https://github.com/cran/phylosim


Authors: Botond Sipos <sbotond@gmail.com>, Gregory Jordan <greg@ebi.ac.uk>


Documentation:   PDF Manual  


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GPL (>= 3) license


Imports R.methodsS3

Depends on R.oo, ape, compoisson, ggplot2


Depended on by pcrcoal.


See at CRAN