Testing Pleiotropy in Multiparental Populations

We implement an adaptation of Jiang & Zeng's (1995) < https://www.genetics.org/content/140/3/1111> likelihood ratio test for testing the null hypothesis of pleiotropy against the alternative hypothesis, two separate quantitative trait loci. The test differs from that in Jiang & Zeng (1995) < https://www.genetics.org/content/140/3/1111> and that in Tian et al. (2016) in that our test accommodates multiparental populations.


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install.packages("qtl2pleio")

1.3.0 by Frederick J Boehm, 11 days ago


https://github.com/fboehm/qtl2pleio


Report a bug at https://github.com/fboehm/qtl2pleio/issues


Browse source code at https://github.com/cran/qtl2pleio


Authors: Frederick J Boehm [aut, cre]


Documentation:   PDF Manual  


MIT + file LICENSE license


Imports dplyr, gemma2, ggplot2, magrittr, MASS, Rcpp, rlang, tibble, Matrix, furrr

Suggests covr, future, mvtnorm, knitr, rmarkdown, testthat, broman, devtools, qtl2

Linking to Rcpp, testthat, RcppEigen


See at CRAN