Summaries and Population Structure Analyses of Genetic Data

A toolkit for analyzing stratified population genetic data. Functions are provided for summarizing and checking loci (haploid, diploid, and polyploid), single stranded DNA sequences, calculating most population subdivision metrics, and running external programs such as structure and fastsimcoal. The package is further described in Archer et al (2016) .


strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.

To install the stable version (v. 1.0.4) from CRAN:

install.packages('strataG')

To install the latest version from GitHub:

# make sure you have Rtools installed
if (!require('devtools')) install.packages('devtools')
# install from GitHub
devtools::install_github('ericarcher/strataG', build_vignettes = TRUE)

You can see the most recent changes to the package in the NEWS.md file: https://github.com/EricArcher/strataG/blob/master/NEWS.md

News

Reference manual

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install.packages("strataG")

2.0.2 by Eric Archer, 7 months ago


https://github.com/EricArcher/strataG


Report a bug at https://github.com/EricArcher/strataG/issues


Browse source code at https://github.com/cran/strataG


Authors: Eric Archer [aut, cre], Paula Adams [aut], Brita Schneiders [aut], Sarina Fernandez [aut], Warren Asfazadour [aut]


Documentation:   PDF Manual  


GNU General Public License license


Imports data.table, copula, DT, ggplot2, graphics, grid, gridExtra, Hmisc, methods, pegas, phangorn, RColorBrewer, Rcpp, shiny, shinyFiles, stats, survival, swfscMisc, utils

Depends on apex, ape, adegenet

Suggests knitr, rmarkdown, testthat

Linking to Rcpp


Imported by skeleSim.


See at CRAN