Hybrid Trait Evolution under Brownian Motion

Analyzes the phenotypic evolution of species of hybrid origin on a phylogenetic network. This package can detect the hybrid vigor effect, a burst of variation at formation, and the relative portion of heritability from its parents. Parameters are estimated by maximum likelihood. Users need to enter a comparative data set, a phylogeny, and information on gene flow leading to hybrids. See Jhwueng and O'Meara (2017) .

Build Status

This is a package for doing comparative methods on networks. It's been in peer review twice but not accepted, and the current version has a fatal flaw. So don't use it.

To install it (but see caveat above):



Reference manual

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1.5.2 by Dwueng-Chwuan Jhwueng, 5 months ago

Browse source code at https://github.com/cran/BMhyb

Authors: Dwueng-Chwuan Jhwueng <[email protected]> and Brian O'Meara <[email protected]>

Documentation:   PDF Manual  

GPL (>= 2) license

Imports corpcor, numDeriv, geiger, ape, TreeSim, phytools, phylobase, mvtnorm, grDevices, graphics, methods, stats, lhs, viridis, Matrix, DEoptim

Suggests testthat

See at CRAN