Graphical Display of Pairwise Linkage Disequilibria Between SNPs

Produces a graphical display, as a heat map, of measures of pairwise linkage disequilibria between SNPs. Users may optionally include the physical locations or genetic map distances of each SNP on the plot.


Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.


0.99-4 by Brad McNeney, 2 months ago

Browse source code at

Authors: Ji-Hyung Shin <[email protected]>, Sigal Blay <[email protected]>, Nicholas Lewin-Koh <[email protected]>, Brad McNeney <[email protected]>, Jinko Graham <[email protected]>

Documentation:   PDF Manual  

Task views: Statistical Genetics

GPL-3 license

Imports grid, genetics, snpStats

Suggests rtracklayer, GenomicRanges, GenomeInfoDb, IRanges, lattice, ggplot2

Imported by lmem.gwaser, synbreed.

See at CRAN