Graphical Display of Pairwise Linkage Disequilibria Between SNPs

Produces a graphical display, as a heat map, of measures of pairwise linkage disequilibria between SNPs. Users may optionally include the physical locations or genetic map distances of each SNP on the plot.


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Reference manual

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install.packages("LDheatmap")

0.99-2 by Brad McNeney, a year ago


http://stat.sfu.ca/statgen/research/ldheatmap.html


Browse source code at https://github.com/cran/LDheatmap


Authors: Ji-Hyung Shin <shin@sfu.ca>, Sigal Blay <sblay@sfu.ca>, Nicholas Lewin-Koh <nikko@hailmail.net>, Brad McNeney <mcneney@sfu.ca>, Jinko Graham <jgraham@sfu.ca>


Documentation:   PDF Manual  


Task views: Statistical Genetics


GPL-3 license


Imports genetics, chopsticks

Depends on grid

Suggests rtracklayer, GenomicRanges, GenomeInfoDb, IRanges, lattice, ggplot2


Imported by lmem.gwaser, synbreed.


See at CRAN