Partition-Assisted Clustering and Multiple Alignments of Networks

Implements Partition-Assisted Clustering and Multiple Alignments of Networks. It 1) utilizes partition-assisted clustering to find robust and accurate clusters and 2) discovers coherent relationships of clusters across multiple samples. It is particularly useful for analyzing single-cell data set.


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install.packages("PAC")

1.0.9 by Ye Henry Li, a month ago


http://biorxiv.org/content/early/2017/03/28/116566


Browse source code at https://github.com/cran/PAC


Authors: Ye Henry Li, Dangna Li


Documentation:   PDF Manual  


GPL-3 license


Imports Rcpp, igraph, parmigene, infotheo, dplyr, Rtsne, ggplot2, ggrepel

Suggests knitr, NMF

Linking to Rcpp

System requirements: C++11


See at CRAN