Partition-Assisted Clustering and Multiple Alignments of Networks

Implements partition-assisted clustering and multiple alignments of networks. It 1) utilizes partition-assisted clustering to find robust and accurate clusters and 2) discovers coherent relationships of clusters across multiple samples. It is particularly useful for analyzing single-cell data set. Please see Li et al. (2017) for detail method description.


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install.packages("PAC")

1.0.10 by Ye Henry Li, 4 months ago


https://doi.org/10.1371/journal.pcbi.1005875


Browse source code at https://github.com/cran/PAC


Authors: Ye Henry Li, Dangna Li


Documentation:   PDF Manual  


GPL-3 license


Imports Rcpp, igraph, parmigene, infotheo, dplyr, Rtsne, ggplot2, ggrepel

Suggests knitr

Linking to Rcpp

System requirements: C++11


See at CRAN