Compute the Annotation Error of Peak Calls

Chromatin immunoprecipitation DNA sequencing results in genomic tracks that show enriched regions or peaks where proteins are bound. This package implements fast C code that computes the true and false positives with respect to a database of annotated regions.


News

2017.06.19

Register routines for CRAN check.

2017.03.31

Title change for CRAN check.

2016.02.08

compute_error.R command line tool and tests.

2014.8.6

0-based chromStart and 1-based chromEnd, more checks.

2014.7.23

PeakErrorChrom function.

2014.7.18

peaks regions for 1 or more overlapping peaks.

2014.7.17

first version with Peaks, PeakError, tests with 1 region.

Reference manual

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install.packages("PeakError")

2017.06.19 by Toby Dylan Hocking, 8 months ago


Browse source code at https://github.com/cran/PeakError


Authors: Toby Dylan Hocking


Documentation:   PDF Manual  


GPL-3 license


Suggests testthat, ggplot2


Imported by PeakSegJoint.


See at CRAN