Joint Peak Detection in Several ChIP-Seq Samples

Jointly segment several ChIP-seq samples to find the peaks which are the same and different across samples. The fast approximate maximum Poisson likelihood algorithm is described in "PeakSegJoint: fast supervised peak detection via joint segmentation of multiple count data samples" by TD Hocking and G Bourque.


Reference manual

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2017.08.11 by Toby Dylan Hocking, 3 months ago

Browse source code at

Authors: Toby Dylan Hocking

Documentation:   PDF Manual  

GPL-3 license

Imports data.table, PeakError, parallel, penaltyLearning

Suggests testthat, ggplot2

See at CRAN