Automated Cytometry Gating and Annotation

Given the hypothesis of a bimodal distribution of cells for each marker, the algorithm constructs a binary tree, the nodes of which are subpopulations of cells. At each node, observed cells and markers are modeled by both a family of normal distributions and a family of bimodal normal mixture distributions. Splitting is done according to a normalized difference of AIC between the two families.


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install.packages("cytometree")

1.1.1 by Alkhassim Chariff, a month ago


Report a bug at https://github.com/chariff/Cytometree/issues


Browse source code at https://github.com/cran/cytometree


Authors: Chariff Alkhassim, Boris Hejblum


Documentation:   PDF Manual  


LGPL-3 | file LICENSE license


Imports ggplot2, graphics, igraph, mclust, stats

Depends on Rcpp

Suggests knitr, rmarkdown, viridis

Linking to Rcpp, RcppArmadillo


See at CRAN