Common Functionality for the 'dynverse' Packages

Provides common functionality for the 'dynverse' packages. 'dynverse' is created to support the development, execution, and benchmarking of trajectory inference methods. For more information, check out .


BuildStatus AppVeyor BuildStatus CRAN_Status_Badge CoverageStatus

Provides common functionality for the dynverse packages. An overview of this functionality is available using the ?dynutils command or in the examples vignette.

dynverse is created to support the development, execution, and benchmarking of trajectory inference methods. For more information, check out dynverse.org.

Latest changes

Check out news(package = "dynutils") or NEWS.md for a full list of changes.

Recent changes in dynutils 1.0.3 (2019-05-02)

  • FUNCTIONALITY: Added test_h5_installation().

  • BUG FIX: Added compatibility workaround for being able to read hdf5 1.10.4 files on a hdf5 1.8.14 Windows platform (hhoeflin/hdf5r#60).

  • FUNCTIONALITY: calculate_distance() and calculate_similarity() now support sparse matrix calculation thanks to proxyC!

  • SMALL CHANGES: Remove dependencies: glue, Hmisc, devtools, testthat, tidyr.

Recent changes in dynutils 1.0.2 (2019-03-21)

  • BUG FIX: Fix generation of error messages in %all_in%.

  • FUNCTIONALITY: Added read_h5() and write_h5() functions.

  • FUNCTIONALITY: Added is_sparse().

  • FUNCTIONALITY: Added update_news() and recent_news(). So meta!

  • FUNCTIONALITY: Moved calculate_mean() from dyneval to dynutils.

Dynverse dependencies

News

dynutils 1.0.3 (2019-05-02)

  • FUNCTIONALITY: Added test_h5_installation().

  • BUG FIX: Added compatibility workaround for being able to read hdf5 1.10.4 files on a hdf5 1.8.14 Windows platform (hhoeflin/hdf5r#60).

  • FUNCTIONALITY: calculate_distance() and calculate_similarity() now support sparse matrix calculation thanks to proxyC!

  • SMALL CHANGES: Remove dependencies: glue, Hmisc, devtools, testthat, tidyr.

dynutils 1.0.2 (2019-03-21)

  • BUG FIX: Fix generation of error messages in %all_in%.

  • FUNCTIONALITY: Added read_h5() and write_h5() functions.

  • FUNCTIONALITY: Added is_sparse().

  • FUNCTIONALITY: Added update_news() and recent_news(). So meta!

  • FUNCTIONALITY: Moved calculate_mean() from dyneval to dynutils.

dynutils 1.0.1 (2019-02-04)

  • DOCUMENTATION: Fixed functionality vignette not showing any code.

  • FUNCTIONALITY: Add mapdf_lat(). This function expects a data frame, which gets broken down into a list of lists before applying the FUN. It expects the FUN to return a list, which gets transformed into a tibble with list_as_tibble().

  • FUNCTIONALITY: extract_row_to_list() now works with tidy evaluation.

  • TESTING: Expand tests for tibble helper fuctions list_as_tibble() and extract_row_to_list().

  • FUNCTIONALITY: Add safe_tempdir() function. This function creates a unique temporary directory and creates it if necessary.

  • FUNCTIONALITY: Add helper assertion functions %all_in%, %has_names%, is_bounded() and is_single_numeric().

dynutils 1.0.0 (2018-07-18)

  • REMOVED run_until_exit(): This functionality is already sufficiently covered by the processx package.

  • ADDED mapdf() functions: Apply a function to each row of a data frame. These functions are very similar to the purrr::map() functions.

  • ADDED tibble_as_list(): Reverse functionality of list_as_tibble().

  • ADDED project_to_segments(): Project a set of points to to set of segments.

  • DOCUMENTATION: Added documentation to every exported function.

  • DOCUMENTATION: Added overview of functions to ?dynutils.

  • DOCUMENTATION: Added overview of functionality to README.md.

  • TESTING: Expanded tests for tibble helper functions, calculate_distance(), and install_packages().

  • DOCUMENTATION: Added inst/NEWS.md file.

dynutils 0.1.0 (2018-06-24)

  • INITIAL RELEASE ON CRAN: dynutils provides common functionality for the dynverse packages.

Reference manual

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install.packages("dynutils")

1.0.3 by Robrecht Cannoodt, 4 months ago


http://github.com/dynverse/dynutils


Report a bug at https://github.com/dynverse/dynutils/issues


Browse source code at https://github.com/cran/dynutils


Authors: Robrecht Cannoodt [aut, cre] , rcannood) , Wouter Saelens [aut] , zouter)


Documentation:   PDF Manual  


GPL-3 license


Imports assertthat, crayon, desc, dplyr, magrittr, Matrix, methods, proxyC, purrr, Rcpp, remotes, stringr, tibble

Suggests ggplot2, hdf5r, knitr, readr, rmarkdown, testthat

Linking to Rcpp


Imported by GillespieSSA2, SCORPIUS, babelwhale, dyndimred, dynparam.


See at CRAN