Extract Glycan Motifs from Glycan Structures

Identify, count, and match recurring substructures in glycan structures. Supports concrete and generic monosaccharide matching, several structural alignment modes, node-to-node mappings, and batch analysis using subgraph isomorphism. Includes curated motif annotations derived from the 'GlycoMotif' resource < https://glycomotif.glyomics.org/>. Integrates with 'glyrepr' and 'glyparse' for structural glycomics workflows.


Reference manual

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install.packages("glymotif")

1.0.0 by Bin Fu, 3 hours ago


https://glycoverse.github.io/glymotif/, https://github.com/glycoverse/glymotif


Report a bug at https://github.com/glycoverse/glymotif/issues


Browse source code at https://github.com/cran/glymotif


Authors: Bin Fu [aut, cre, cph]


Documentation:   PDF Manual  


MIT + file LICENSE license


Imports cli, glyrepr, glyparse, glydraw, igraph, purrr, rlang, stringr, checkmate, tibble, vctrs, lifecycle, Rcpp

Suggests testthat, patrick, knitr, rmarkdown, dplyr

Linking to BH, Rcpp


See at CRAN