Work with Hyperspectral Data, i.e. Spectra + Meta Information (Spatial, Time, Concentration, ...)

Comfortable ways to work with hyperspectral data sets. I.e. spatially or time-resolved spectra, or spectra with any other kind of information associated with each of the spectra. The spectra can be data as obtained in XRF, UV/VIS, Fluorescence, AES, NIR, IR, Raman, NMR, MS, etc. More generally, any data that is recorded over a discretized variable, e.g. absorbance = f (wavelength), stored as a vector of absorbance values for discrete wavelengths is suitable.


News

FUNCTIONALITY:

o plotc is now a lattice function

o plotc and plotmap gained a standard formula interface

o plotvoronoi is an alternative to plotmap for non-rectangularly spaced grids

o plot (x, "mat") is an abbreviation to plot the spectra matrix

o The special handling of MARGINS in apply changed to be more consistent with standard behaviour apply (x, 1 : 2, FUN, ...) is now calling FUN for each element of the spectra matrix, and apply (x, , FUN, ...) calls FUN with the complete spectra matrix.

o hyperSpec now reads the binary file formats .spc as well as ENVI files.
There are two specialized functions to import Nicolet FTIR Images (ENVI) and Kaiser Raman maps (spc)

o collapse rbinds a list of hyperSpec object that may have different wavelength axes

o a more general way to combine two hyperSpec objects is merge.

DOCUMENTATION:

o Plotting functions are discussed in a separate vignette "plotting" now

o Import- and Export functions for diverse file formats are discussed in vignette "fileio"

Reference manual

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install.packages("hyperSpec")

0.99-20171005 by Claudia Beleites, a month ago


http://hyperSpec.r-forge.r-project.org/


Report a bug at https://github.com/cbeleites/hyperSpec/issues


Browse source code at https://github.com/cran/hyperSpec


Authors: Claudia Beleites [aut, cre, dtc], Valter Sergo [aut], Alois Bonifacio [ctb, dtc], Marcel Dahms [ctb], Björn Egert [ctb], Simon Fuller [ctb], Rustam Guliev [ctb], Bryan Hanson [ctb], Michael Hermes [ctb], Martin Kammer [dtc], Roman Kiselev [ctb], Sebastian Mellor [ctb]


Documentation:   PDF Manual  


Task views: Chemometrics and Computational Physics


GPL (>= 3) license


Imports testthat, methods, utils, latticeExtra

Depends on lattice, grid, ggplot2

Suggests R.matlab, tripack, deldir, rgl, plotrix, sp, baseline, compiler, inline, Rcpp, MASS, fastcluster, pls, mvtnorm, digest, reshape, devtools, R.rsp


Imported by photobiologyInOut, specmine.

Suggested by hsdar, prospectr.


See at CRAN