serodynamics
Modeling Longitudinal Antibody Responses to Infection
Implements Bayesian hierarchical models for estimating
antibody kinetic parameters from longitudinal serological data. Fits
two-phase within-host models capturing antibody rise, peak, and decay
following pathogen infection, using 'JAGS' for posterior inference.
Designed as the upstream companion to the 'serocalculator' package
for end-to-end seroepidemiological analysis. Methods are described in
Teunis and colleagues (2016)
{serodynamics}
The goal of {serodynamics} is to implement methods for modeling
longitudinal antibody responses to infection.
Installation
Once accepted on CRAN, install the released version with:
install.packages("serodynamics")
Or install the development version from GitHub with:
# install.packages("pak")
pak::pak("UCD-SERG/serodynamics")