METACRAN

scCATCH — 3.2.2

2 years ago by Xin Shao

Single Cell Cluster-Based Annotation Toolkit for Cellular Heterogeneity

sccca — 0.1.1

a year ago by Mohamed Soudy

Single-Cell Correlation Based Cell Type Annotation

SCCI — 1.2

6 years ago by Alexander Marx

Stochastic Complexity-Based Conditional Independence Test for Discrete Data

scclust — 0.2.5

a year ago by Fredrik Savje

Size-Constrained Clustering

sccore — 1.0.6

3 months ago by Evan Biederstedt

Core Utilities for Single-Cell RNA-Seq

sccr — 2.1

5 years ago by Alicja Wolny-Dominiak

The Self-Consistent, Competing Risks (SC-CR) Algorithms

SCCS — 1.7

a year ago by Yonas Ghebremichael Weldeselassie

The Self-Controlled Case Series Method

scCustomize — 3.0.1

7 months ago by Samuel Marsh

Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing

SCDA — 0.0.2

8 months ago by Paolo Maranzano

Spatially-Clustered Data Analysis

SCDB — 0.5.1

4 months ago by Rasmus Skytte Randløv

Easily Access and Maintain Time-Based Versioned Data (Slowly-Changing-Dimension)

scDECO — 0.1.1

3 months ago by Anderson Bussing

Estimating Dynamic Correlation

SCdeconR — 1.0.0

a year ago by Yuanhang Liu

Deconvolution of Bulk RNA-Seq Data using Single-Cell RNA-Seq Data as Reference

scdensity — 1.0.3

10 months ago by Mark A. Wolters

Shape-Constrained Kernel Density Estimation

scdhlm — 0.7.3

a year ago by James Pustejovsky

Estimating Hierarchical Linear Models for Single-Case Designs

scDiffCom — 1.0.0

2 years ago by Cyril Lagger

Differential Analysis of Intercellular Communication from scRNA-Seq Data

scDIFtest — 0.1.1

5 years ago by Dries Debeer

Item-Wise Score-Based DIF Detection

scdtb — 0.2.0

10 months ago by Mackson Ncube

Single Case Design Tools

SCE — 1.1.0

6 days ago by Kailong Li

Stepwise Clustered Ensemble

scellpam — 1.4.6.2

a year ago by Juan Domingo

Applying Partitioning Around Medoids to Single Cell Data with High Number of Cells

scenes — 0.1.0

2 years ago by Jon Harmon

Switch Between Alternative 'shiny' UIs

SCEnt — 0.0.1

4 years ago by Hugh Warden

Single Cell Entropy Analysis of Gene Heterogeneity in Cell Populations

SCEPtER — 0.2-4

4 years ago by Matteo Dell'Omodarme

Stellar CharactEristics Pisa Estimation gRid

SCEPtERbinary — 0.1-1

11 years ago by Matteo Dell'Omodarme

Stellar CharactEristics Pisa Estimation gRid for Binary Systems

SCFMonitor — 0.3.5

10 months ago by Pengjun Guo

Clear Monitor and Graphing Software Processing Gaussian .log File

scGate — 1.7.0

2 months ago by Massimo Andreatta

Marker-Based Cell Type Purification for Single-Cell Sequencing Data

SCGLR — 3.1.0

3 months ago by Guillaume Cornu

Supervised Component Generalized Linear Regression

scGOclust — 0.2.1

a year ago by Yuyao Song

Measuring Cell Type Similarity with Gene Ontology in Single-Cell RNA-Seq

scgwr — 0.1.2-21

4 years ago by Daisuke Murakami

Scalable Geographically Weighted Regression

sched — 1.0.3

9 months ago by Pierrick Roger

Request Scheduler

schematic — 0.1.2

a month ago by Will Hipson

Tidy Schema Validation for Data Frames

schemr — 0.3.1

5 months ago by Stuart Morrison

Convert Images to Usable Color Schemes

schoenberg — 2.0.3

a year ago by Jeffrey A. Dahlke

Tools for 12-Tone Musical Composition

scholar — 0.2.5

12 days ago by Guangchuang Yu

Analyse Citation Data from Google Scholar

SchoolDataIT — 0.2.6

2 months ago by Leonardo Cefalo

Retrieve, Harmonise and Map Open Data Regarding the Italian School System

schoolmath — 0.4.2

2 years ago by Jörg große Schlarmann

Functions and Datasets for Math Used in School

schoRsch — 1.11

8 months ago by Roland Pfister

Tools for Analyzing Factorial Experiments

schrute — 1.0.1

3 years ago by Brad Lindblad

The Entire Transcript from the Office in Tidy Format

schtools — 0.4.1

2 years ago by Kelly Sovacool

Schloss Lab Tools for Reproducible Microbiome Research

schumaker — 1.2.1

4 years ago by Stuart Baumann

Schumaker Shape-Preserving Spline

schwabr — 0.1.3

4 months ago by Anthony Trevisan

'Schwab API' Interface

SCI — 1.0-3

2 months ago by Lukas Gudmundsson

Standardized Climate Indices Such as SPI, SRI or SPEI

SCIBER — 0.2.2

2 years ago by Dailin Gan

Single-Cell Integrator and Batch Effect Remover

scico — 1.5.0

2 years ago by Thomas Lin Pedersen

Colour Palettes Based on the Scientific Colour-Maps

scicomptools — 1.1.1

2 months ago by Angel Chen

Tools Developed by the NCEAS Scientific Computing Support Team

scidesignR — 1.0.0

3 years ago by Nathan Taback

Data Sets from Design and Analysis of Experiments and Observational Studies using R

scientific — 2025.1

4 months ago by Obinna Obianom

Two Highly Customizable 'rmarkdown' Themes for Scientific Reports

scientoText — 0.1

9 years ago by Ashraf Uddin

Text & Scientometric Analytics

scifigure — 0.2

6 years ago by Prasad Patil

Visualize 'Reproducibility' and 'Replicability' in a Comparison of Scientific Studies

scimo — 0.0.2

a year ago by Antoine BICHAT

Extra Recipes Steps for Dealing with Omics Data

SCINA — 1.2.0

6 years ago by Ze Zhang

A Semi-Supervised Category Identification and Assignment Tool

scINSIGHT — 0.1.4

3 years ago by Kun Qian

Interpretation of Heterogeneous Single-Cell Gene Expression Data

SCIntRuler — 0.99.6

a year ago by Yue Lyu

Guiding the Integration of Multiple Single-Cell RNA-Seq Datasets

sciplot — 1.2-0

5 years ago by Manuel Morales

Scientific Graphing Functions for Factorial Designs

scipub — 1.2.3

a year ago by David Pagliaccio

Summarize Data for Scientific Publication

sciRmdTheme — 0.1

3 years ago by Obinna Obianom

Upgraded 'Rmarkdown' Themes for Scientific Writing

scISR — 0.1.1

3 years ago by Duc Tran

Single-Cell Imputation using Subspace Regression

scistreer — 1.2.0

2 years ago by Teng Gao

Maximum-Likelihood Perfect Phylogeny Inference at Scale

scitb — 0.2.1

9 months ago by Qiang Liu

Provides Some Useful Functions for Making Statistical Tables

scITD — 1.0.4

2 years ago by Jonathan Mitchel

Single-Cell Interpretable Tensor Decomposition

SciViews — 0.9-13.2

3 months ago by Philippe Grosjean

SciViews - Main package

scLink — 1.0.1

5 years ago by Wei Vivian Li

Inferring Functional Gene Co-Expression Networks from Single Cell Data

sClust — 1.0

4 years ago by Emilie Poisson-Caillault

R Toolbox for Unsupervised Spectral Clustering

SCMA — 1.3.1

5 years ago by Tamal Kumar De

Single-Case Meta-Analysis

scMappR — 1.0.12

12 days ago by Dustin Sokolowski

Single Cell Mapper

scModels — 1.0.4

2 years ago by Lisa Amrhein

Fitting Discrete Distribution Models to Count Data

scOntoMatch — 0.1.1

2 years ago by Yuyao Song

Aligning Ontology Annotation Across Single Cell Datasets with 'scOntoMatch'

scoper — 1.3.0

2 years ago by Susanna Marquez

Spectral Clustering-Based Method for Identifying B Cell Clones

scopr — 0.3.5

5 months ago by Quentin Geissmann

Read Ethoscope Data

SCOPRO — 0.1.0

3 years ago by Gabriele Lubatti

Score Projection Between in 'Vivo' and in 'Vitro' Datasets

SCOR — 1.1.2

2 years ago by Debsurya De

Spherically Constrained Optimization Routine

score — 1.0.2

10 years ago by Jaejoon Song

A Package to Score Behavioral Questionnaires

scorecard — 0.4.4

a year ago by Shichen Xie

Credit Risk Scorecard

scorecardModelUtils — 0.0.1.0

6 years ago by Arya Poddar

Credit Scorecard Modelling Utils

scoredec — 0.1.2

8 months ago by Christos Adam

S-Core Graph Decomposition

ScoreEB — 0.1.1

4 years ago by Wenlong Ren

Score Test Integrated with Empirical Bayes for Association Study

scorematchingad — 0.1.1

6 months ago by Kassel Liam Hingee

Score Matching Estimation by Automatic Differentiation

scorepeak — 0.1.2

6 years ago by Shota Ochi

Peak Functions for Peak Detection in Univariate Time Series

scoring — 0.6

7 years ago by Ed Merkle

Proper Scoring Rules

scoringfunctions — 1.1

4 months ago by Hristos Tyralis

A Collection of Loss Functions for Assessing Point Forecasts

scoringRules — 1.1.3

10 months ago by Fabian Krueger

Scoring Rules for Parametric and Simulated Distribution Forecasts

scoringutils — 2.1.1

12 days ago by Nikos Bosse

Utilities for Scoring and Assessing Predictions

SCORNET — 0.1.1

5 years ago by Yuri Ahuja

Semi-Supervised Calibration of Risk with Noisy Event Times

SCORPION — 1.0.2

a year ago by Daniel Osorio

Single Cell Oriented Reconstruction of PANDA Individual Optimized Networks

SCORPIUS — 1.0.9

2 years ago by Robrecht Cannoodt

Inferring Developmental Chronologies from Single-Cell RNA Sequencing Data

ScottKnott — 1.3-3

4 months ago by Ivan Bezerra Allaman

The ScottKnott Clustering Algorithm

ScottKnottESD — 2.0.3

7 years ago by Chakkrit Tantithamthavorn

The Scott-Knott Effect Size Difference (ESD) Test

scout — 1.0.4

10 years ago by Daniela M. Witten

Implements the Scout Method for Covariance-Regularized Regression

scoutbaR — 0.2.0

4 months ago by David Granjon

A Spotlight 'React' Widget for 'shiny' Apps

SCOUTer — 1.0.0

5 years ago by Alba Gonzalez Cebrian

Simulate Controlled Outliers

SCperf — 1.1.1

7 years ago by Marlene Marchena

Functions for Planning and Managing Inventories in a Supply Chain

scperturbR — 0.1.0

2 years ago by Stefan Peidli

E-Statistics for Seurat Objects

scpi — 3.0.1

4 days ago by Filippo Palomba

Prediction Intervals for Synthetic Control Methods with Multiple Treated Units and Staggered Adoption

scPipeline — 0.2.0.0

4 months ago by Viswanadham Sridhara

A Wrapper for 'Seurat' and Related R Packages for End-to-End Single Cell Analysis

scPloidy — 0.6.2

a year ago by Fumihiko Takeuchi

Infer Ploidy of Single Cells

scplot — 0.6.0

8 days ago by Juergen Wilbert

Plot Function for Single-Case Data Frames

scpoisson — 0.0.1

3 years ago by Yue Pan

Single Cell Poisson Probability Paradigm

SCpubr — 2.0.2

2 years ago by Enrique Blanco-Carmona

Generate Publication Ready Visualizations of Single Cell Transcriptomics Data

scqe — 1.0.0

4 years ago by Kirsten Landsiedel

Stability Controlled Quasi-Experimentation

scquantum — 1.0.0

3 years ago by Alexander Davis

Estimate Ploidy and Absolute Copy Number from Single Cell Sequencing

scR — 0.4.0

6 months ago by Perry Carter

Estimate Vapnik-Chervonenkis Dimension and Sample Complexity

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