Analysis of MEDITS-Like Survey Data

Set of functions working with survey data in the format of the MEDITS project < https://www.sibm.it/SITO%20MEDITS/principaleprogramme.htm>. In this version, functions use TA, TB and TC tables respectively containing haul, catch and aggregated biological data.

Linear, Logistic and Generalized Linear Models Regressions for the EnvWAS/EWAS Approach

Tool for Environment-Wide Association Studies (EnvWAS / EWAS) which are repeated analysis. It includes three functions. One function for linear regression, a second for logistic regression and a last one for generalized linear models.

Auto-GO: Reproducible, Robust and High Quality Ontology Enrichment Visualizations

Auto-GO is a framework that enables automated, high quality Gene Ontology enrichment analysis visualizations. It also features a handy wrapper for Differential Expression analysis around the 'DESeq2' package described in Love et al. (2014) . The whole framework is structured in different, independent functions, in order to let the user decide which steps of the analysis to perform and which plot to produce.