Formal Parser and Related Tools for R Markdown Documents

An implementation of a formal grammar and parser for R Markdown documents using the Boost Spirit X3 library. It also includes a collection of high level functions for working with the resulting abstract syntax tree.

Ordered Composite Endpoints with Censoring

Estimates win ratio or Mann-Whitney parameter for two group comparisons using ordered composite endpoints with right censoring as described in Follmann, Fay, Hamasaki, and Evans (2020).

Easy Dockerfile Creation from R

Build a Dockerfile straight from your R session. 'dockerfiler' allows you to create step by step a Dockerfile, and provide convenient tools to wrap R code inside this Dockerfile.

Keyboard Shortcuts for 'shiny'

Assign and listen to keyboard shortcuts in 'shiny' using the 'Mousetrap' Javascript library.

Multidimensional Nuclear Magnetic Resonance Peak Fitting and Analysis

Tools for fitting and analyzing 1D-4D nuclear magnetic resonance spectra with analytical models of peak shapes and peak groups. The package reads spectra in 'NMRPipe' format, builds constrained parameter structures for chemical shifts, line widths, scalar couplings, volumes, and phases, and performs nonlinear least-squares optimization for iterative peak discovery or simultaneous fits across multiple spectra. It also provides methods for visualization, preprocessing, and kinetic analysis of 1D time-series data, including automated phase optimization, solvent suppression, time-domain correction for frequency shifts and line broadening, modeling spectra as linear combinations of two component spectra, and exponential rate fitting.

Send Email Messages

A light, simple tool for sending emails with minimal dependencies.

Run Quality Checks on Data Prior to Submission to ICES

Run quality checks on data sets using the same checks that are conducted on the ICES Data Submission Utility (DATSU) < https://datsu.ices.dk>.

Predict Fish Year-Class Strength from Survey Data

Predict fish year-class strength by calibration regression analysis of multiple recruitment index series.

Link to the ICES Vessel Monitoring System and Logbook Database Web Services

Links to the ICES Vessel Monitoring System (VMS) and logbook database web services < https://data.ices.dk/vms/webservices> to allow users to download summaries and data products.

Interface to 'typeform' Results

An R interface to the 'typeform' < https://www.typeform.com/> application program interface. Also provides functions for downloading your results.