Optimum Contribution Selection and Population Genetics

A framework for the optimization of breeding programs via optimum contribution selection and mate allocation. An easy to use set of function for computation of optimum contributions of selection candidates, and of the population genetic parameters to be optimized. These parameters can be estimated using pedigree or genotype information, and include kinships, kinships at native haplotype segments, and breed composition of crossbred individuals. They are suitable for managing genetic diversity, removing introgressed genetic material, and accelerating genetic gain. Additionally, functions are provided for computing genetic contributions from ancestors, inbreeding coefficients, the native effective size, the native genome equivalent, pedigree completeness, and for preparing and plotting pedigrees. The methods are described in:\n Wellmann, R., and Pfeiffer, I. (2009) .\n Wellmann, R., and Bennewitz, J. (2011) .\n Wellmann, R., Hartwig, S., Bennewitz, J. (2012) .\n de Cara, M. A. R., Villanueva, B., Toro, M. A., Fernandez, J. (2013) .\n Wellmann, R., Bennewitz, J., Meuwissen, T.H.E. (2014) .\n Wellmann, R. (2019) .

Multivariate Polynomials with Rational Coefficients

Symbolic calculation and evaluation of multivariate polynomials with rational coefficients. This package is strongly inspired by the 'spray' package. It provides a function to compute Gröbner bases (reference ). It also includes some features for symmetric polynomials, such as the Hall inner product. The header file of the C++ code can be used by other packages. It provides the templated class 'Qspray' that can be used to represent and to deal with multivariate polynomials with another type of coefficients.

Get Spanish Origin-Destination Data

Gain seamless access to origin-destination (OD) data from the Spanish Ministry of Transport, hosted at < https://www.transportes.gob.es/ministerio/proyectos-singulares/estudios-de-movilidad-con-big-data/opendata-movilidad>. This package simplifies the management of these large datasets by providing tools to download zone boundaries, handle associated origin-destination data, and process it efficiently with the 'duckdb' database interface. Local caching minimizes repeated downloads, streamlining workflows for researchers and analysts. Extensive documentation is available at < https://ropenspain.github.io/spanishoddata/index.html>, offering guides on creating static and dynamic mobility flow visualizations and transforming large datasets into analysis-ready formats.

Statistical Bias Correction Kit

Implementation of several recent multivariate bias correction methods with a unified interface to facilitate their use. A description and comparison between methods can be found in .

Colors for all

Color palettes for all people, including those with color vision deficiency. Popular color palette series have been organized by type and have been scored on several properties such as color-blind-friendliness and fairness (i.e. do colors stand out equally?). Own palettes can also be loaded and analysed. Besides the common palette types (categorical, sequential, and diverging) it also includes cyclic and bivariate color palettes. Furthermore, a color for missing values is assigned to each palette.

Diversity Measures on Tripartite Graphs

Computing diversity measures on tripartite graphs. This package first implements a parametrized family of such diversity measures which apply on probability distributions. Sometimes called "True Diversity", this family contains famous measures such as the richness, the Shannon entropy, the Herfindahl-Hirschman index, and the Berger-Parker index. Second, the package allows to apply these measures on probability distributions resulting from random walks between the levels of tripartite graphs. By defining an initial distribution at a given level of the graph and a path to follow between the three levels, the probability of the walker's position within the final level is then computed, thus providing a particular instance of diversity to measure.

Provides a Function to Calculate Prize Winner Indices Based on Bibliometric Data

A function 'PWI()' that calculates prize winner indices based on bibliometric data is provided. The default is the 'Derek de Solla Price Memorial Medal'. Users can provide recipients of other prizes.

A Simple Data Science Challenge System

A simple data science challenge system using R Markdown and 'Dropbox' < https://www.dropbox.com/>. It requires no network configuration, does not depend on external platforms like e.g. 'Kaggle' < https://www.kaggle.com/> and can be easily installed on a personal computer.

Structured Covariances Estimators for Pairwise and Spatial Covariates

Implements estimators for structured covariance matrices in the presence of pairwise and spatial covariates. Metodiev, Perrot-Dockès, Ouadah, Fosdick, Robin, Latouche & Raftery (2025) .

Regression and Classification Tools

Tools for linear, nonlinear and nonparametric regression and classification. Novel graphical methods for assessment of parametric models using nonparametric methods. One vs. All and All vs. All multiclass classification, optional class probabilities adjustment. Nonparametric regression (k-NN) for general dimension, local-linear option. Nonlinear regression with Eickert-White method for dealing with heteroscedasticity. Utilities for converting time series to rectangular form. Utilities for conversion between factors and indicator variables. Some code related to "Statistical Regression and Classification: from Linear Models to Machine Learning", N. Matloff, 2017, CRC, ISBN 9781498710916.