Downscaling Species Occupancy

Uses species occupancy at coarse grain sizes to predict species occupancy at fine grain sizes. Ten models are provided to fit and extrapolate the occupancy-area relationship, as well as methods for preparing atlas data for modelling. See Marsh et. al. (2018) .

Partial Orders and Relations

Finds equivalence classes corresponding to a symmetric relation or undirected graph. Finds total order consistent with partial order or directed graph (so-called topological sort).

Package for Reading Binary Files

Functions and analytics for GENEA-compatible accelerometer data into R objects. See topic 'GENEAread' for an introduction to the package. See < https://activinsights.com/technology/geneactiv/> for more details on the GENEActiv device.

Provides a Link Between the 'LSEG Datastream' System and R

Provides a set of functions and a class to connect, extract and upload information from the 'LSEG Datastream' database. This package uses the 'DSWS' API. Details of this API are available at < https://www.lseg.com/en/data-analytics>. Please report issues at < https://github.com/CharlesCara/DatastreamDSWS2R/issues>.

K-Means with Simultaneous Outlier Detection

An implementation of the 'k-means--' algorithm proposed by Chawla and Gionis, 2013 in their paper, "k-means-- : A unified approach to clustering and outlier detection. SIAM International Conference on Data Mining (SDM13)", and using 'ordering' described by Howe, 2013 in the thesis, Clustering and anomaly detection in tropical cyclones". Useful for creating (potentially) tighter clusters than standard k-means and simultaneously finding outliers inexpensively in multidimensional space.

Tools for Antitrust Practitioners

A collection of tools for antitrust practitioners, including the ability to calibrate different consumer demand systems and simulate the effects of mergers under different competitive regimes.

All Hierarchical or Graphical Generalized Linear Models

Find all hierarchical models of specified generalized linear model with information criterion (AIC, BIC, or AICc) within specified cutoff of minimum value. Alternatively, find all such graphical models. Use branch and bound algorithm so we do not have to fit all models.

Continuous Time Structural Equation Modelling - Old 'OpenMx'-Based Version

Original 'ctsem' (continuous time structural equation modelling) functionality, based on the 'OpenMx' software, as described in Driver, Oud, Voelkle (2017) , with updated details in vignette. Combines stochastic differential equations representing latent processes with structural equation measurement models. This package is maintained for consistency with the original 'ctsem' paper, but for the much newer and more capable 'ctsem' package, see < https://cran.r-project.org/package=ctsem>.

RNA-Seq Analysis and Genome Visualization 'Shiny' Platform

Interactive 'Shiny' web application for comprehensive RNA-Seq data analysis, quality control, differential expression analysis with 'DESeq2', dimensionality reduction (PCA, t-SNE, UMAP), clustering, and integrated 'JBrowse 2' genome visualization. For differential expression analysis methods, see Love (2014) .

A Graphical User Interface for Antitrust and Trade Practitioners

A graphical user interface for simulating the effects of mergers, tariffs, and quotas under an assortment of different economic models. The interface is powered by the 'Shiny' web application framework from 'RStudio'.