Portfolio Analysis, Including Numerical Methods for Optimization of Portfolios

Portfolio optimization and analysis routines and graphics.

Missingness Benchmark for Continuous Glucose Monitoring Data

Evaluates predictive performance under feature-level missingness in repeated-measures continuous glucose monitoring-like data. The benchmark injects missing values at user-specified rates, imputes incomplete feature matrices using an iterative chained-equations approach inspired by multivariate imputation by chained equations (MICE; Azur et al. (2011) ), fits Random Forest regression models (Breiman (2001) ) and k-nearest-neighbor regression models (Zhang (2016) ), and reports mean absolute percentage error and R-squared across missingness rates.

Bayesian Estimation of an Exploratory Deterministic Input, Noisy and Gate Model

Perform a Bayesian estimation of the exploratory deterministic input, noisy and gate (EDINA) cognitive diagnostic model described by Chen et al. (2018) .

Exploratory Reduced Reparameterized Unified Model Estimation

Perform a Bayesian estimation of the exploratory reduced reparameterized unified model (ErRUM) described by Culpepper and Chen (2018) .

Estimating Infection Rates from Serological Data

Translates antibody levels measured in cross-sectional population samples into estimates of the frequency with which seroconversions (infections) occur in the sampled populations. Replaces the previous `seroincidence` package.

Discrimination Mitigation for Machine Learning Models

Based on different statistical definitions of discrimination, several methods have been proposed to detect and mitigate social inequality in machine learning models. This package aims to provide an alternative to fairness treatment in predictive models. The ROC method implemented in this package is described by Kamiran, Karim and Zhang (2012) < https://ieeexplore.ieee.org/document/6413831/>.

Bayesian Modeling via Frequentist Goodness-of-Fit

A Bayesian data modeling scheme that performs four interconnected tasks: (i) characterizes the uncertainty of the elicited parametric prior; (ii) provides exploratory diagnostic for checking prior-data conflict; (iii) computes the final statistical prior density estimate; and (iv) executes macro- and micro-inference. Primary reference is Mukhopadhyay, S. and Fletcher, D. 2018 paper "Generalized Empirical Bayes via Frequentist Goodness of Fit" (< https://www.nature.com/articles/s41598-018-28130-5 >).

Choi and Hall Style Data Sharpening

Functions for use in perturbing data prior to use of nonparametric smoothers and clustering.

Data sets from "SAS System for Mixed Models"

Data sets and sample lmer analyses corresponding to the examples in Littell, Milliken, Stroup and Wolfinger (1996), "SAS System for Mixed Models", SAS Institute.

Generalized Additive Latent and Mixed Models

Estimates generalized additive latent and mixed models using maximum marginal likelihood, as defined in Sorensen et al. (2023) , which is an extension of Rabe-Hesketh and Skrondal (2004)'s unifying framework for multilevel latent variable modeling . Efficient computation is done using sparse matrix methods, Laplace approximation, and automatic differentiation. The framework includes generalized multilevel models with heteroscedastic residuals, mixed response types, factor loadings, smoothing splines, crossed random effects, and combinations thereof. Syntax for model formulation is close to 'lme4' (Bates et al. (2015) ) and 'PLmixed' (Rockwood and Jeon (2019) ).