Full Factorial Breeding Analysis

We facilitate the analysis of full factorial mating designs with mixed-effects models. The package contains six vignettes containing detailed examples.

Mango Solutions Training Datasets

Datasets to be used primarily in conjunction with Mango Solutions training materials but also for the book 'SAMS Teach Yourself R in 24 Hours' (ISBN: 978-0-672-33848-9). Version 1.0-7 is largely for use with the book; however, version 1.1 has a much greater focus on use with training materials, whilst retaining compatibility with the book.

Segmentation and Classification of Accelerometer Data

Segmentation and classification procedures for data from the 'Activinsights GENEActiv' < https://activinsights.com/technology/geneactiv/> accelerometer that provides the user with a model to guess behaviour from test data where behaviour is missing. Includes a step counting algorithm, a function to create segmented data with custom features and a function to use recursive partitioning provided in the function rpart() of the 'rpart' package to create classification models.

Estimate the Cause of Recurrent Vivax Malaria using Genetic Data

Plot malaria parasite genetic data on two or more episodes. Compute per-person posterior probabilities that each Plasmodium vivax (Pv) recurrence is a recrudescence, relapse, or reinfection (3Rs) using per-person P. vivax genetic data on two or more episodes and a statistical model described in Taylor, Foo and White (2022) . Plot per-recurrence posterior probabilities.

Karl Broman's R Code

Miscellaneous R functions, including functions related to graphics (mostly for base graphics), permutation tests, running mean/median, and general utilities.