Importing Real-Time Thermo Cycler (qPCR) Data from RDML Format Files

Imports real-time thermo cycler (qPCR) data from Real-time PCR Data Markup Language (RDML) and transforms to the appropriate formats of the 'qpcR' and 'chipPCR' packages. Contains a dendrogram visualization for the structure of RDML object and GUI for RDML editing.

Imports qPCR data from RDML v1.1 format files (Lefever et al. 2009) and transforms it to the appropriate format of the qpcR package (Ritz et al. 2008, Spiess et al. 2008) or chipPCR package. RDML (Real-time PCR Data Markup Language) is the recommended file format element in the Minimum Information for Publication of Quantitative Real-Time PCR Experiments (MIQE) guidelines (Bustin et al. 2009).

You can install the latest development version of the code using the devtools R package.



Reference manual

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0.9-9 by Konstantin A. Blagodatskikh, 4 months ago

Browse source code at

Authors: Konstantin A. Blagodatskikh [cre, aut], Stefan Roediger [aut], Michal Burdukiewicz [aut], Andrej-Nikolai Spiess [aut]

Documentation:   PDF Manual  

MIT + file LICENSE license

Imports checkmate, data.table, pipeR, readxl, rlist, R6, stringr, tools, xml2, lubridate

Suggests chipPCR, magrittr, reshape2, qpcR, dplyr, ggplot2, knitr, kfigr, MBmca, shiny, shinyjs, shinythemes, V8, testthat

Suggested by PCRedux, chipPCR.

See at CRAN