Time-Course Gene Set Analysis

Implementation of Time-course Gene Set Analysis (TcGSA), a method for analyzing longitudinal gene-expression data at the gene set level.


News about the R package TcGSA:

Main changes in Version 0.10.5 (2017-05-03):

  • Bug fix: plot.TcGSA better handles more various geneses names

Reference manual

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0.11.1 by Boris P. Hejblum, 16 days ago

Report a bug at https://github.com/borishejblum/TcGSA/issues

Browse source code at https://github.com/cran/TcGSA

Authors: Boris P. Hejblum [aut, cre], Damien Chimits [aut], Anthony Devaux [aut]

Documentation:   PDF Manual  

GPL-2 | file LICENSE license

Imports lme4, reshape2, GSA, multtest, cluster, cowplot, gplots, graphics, grDevices, gtools, stringr, splines, stats, utils

Depends on ggplot2

Suggests foreach, parallel, doParallel, tcgsaseq, knitr, GEOquery, rmarkdown

See at CRAN