"Finding Groups in Data": Cluster Analysis Extended Rousseeuw et al.

Methods for Cluster analysis. Much extended the original from Peter Rousseeuw, Anja Struyf and Mia Hubert, based on Kaufman and Rousseeuw (1990) "Finding Groups in Data".


ORIGINAL README :

  This directory contains code, help and examples for CLUS, an S-PLUS
  package for clustering, as described in ``Clustering in an
  Object-Oriented Environment'' by Anja Struyf, Mia Hubert, and Peter
  J. Rousseeuw (Journal of Statistical Software, volume 1).
------------------------------------------------------------------------

See http://www.stat.ucla.edu/journals/jss/ for the original version.

The current port is based on material now on
	http://www.agoras.ua.ac.be/

KH <[email protected]> 1998/05/21

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For historical reasons,
we keep R/README-Splus which has no relevance to the R package.

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TODO {see ./TODO-MM for MM's private 'todo' list;  ./DONE-MM for things done}

 3) daisy() for the case of mixed variables should allow
    a weight vector (of length p = #vars) for up- or downweighing variables.
    daisy() really should accept the other methods mva's dist() does _and_
    it should use dist's C API -- but we have no C API for package code, ARRGH!

 4) Eliminate the many Fortran (g77 -Wall) warnings of the form
    >> mona.f:101: warning: `jma' might be used uninitialized in this function

 6) Mona objects describe a hierarchical clustering; they could also inherit
    from twins, and hence have a pltree() method for plotting the
    hierarchical tree.

 8b) Think about "merging" the plot.agnes and plot.diana methods.



------------------

Martin <[email protected]>, since 1999

Reference manual

It appears you don't have a PDF plugin for this browser. You can click here to download the reference manual.

install.packages("cluster")

2.1.8.3 by Martin Maechler, 3 months ago


https://svn.r-project.org/R-packages/trunk/cluster/


Browse source code at https://github.com/cran/cluster


Authors: Martin Maechler [aut, cre] (ORCID: , Peter Rousseeuw [aut] (Fortran original , ORCID: , Anja Struyf [aut] (S original) , Mia Hubert [aut] (S original , ORCID: , Kurt Hornik [trl, ctb] (port to R; maintenance(1999-2000) , ORCID: , Matthias Studer [ctb] , Pierre Roudier [ctb] , Juan Gonzalez [ctb] , Kamil Kozlowski [ctb] , Erich Schubert [ctb] (fastpam options for pam() , ORCID: , Keefe Murphy [ctb] (volume.ellipsoid({d >= 3}))


Documentation:   PDF Manual  


GPL (>= 2) license


Imports graphics, grDevices, stats, utils

Suggests MASS, Matrix

Enhances mvoutlier, fpc, ellipse, sfsmisc


Imported by Anthropometry, BCClong, BCHM, C443, CAinterprTools, CLUSTShiny, CPC, Cascade, Clustering, Compositional, Compositionalcln, Compositionalscsmr, ConsensusClustering, CrossClustering, DIscBIO, DPCD, DTSR, DisimForMixed, ECoL, EcotoneFinder, EvaluateCore, EvoPhylo, ExtremalDep, FADPclust, FPDclustering, FactoMineR, FastRet, FieldSimR, FishDiveR, FuzzyQ, GET, GIC, GSSTDA, GeneNMF, GowerSom, GridOnClusters, HVT, HierPortfolios, Hmisc, ICSClust, INCVCommunityDetection, KMEANS.KNN, LKT, LocalControl, MEDseq, MGMM, MSclust, MazamaLocationUtils, Mercator, MetaHD, MicrobTiSDA, MixGHD, MixtureMissing, MorphoRegions, MosaiClusteR, Nestimate, OceanTracer, OpenSpecy, PINSPlus, PReMiuM, PSF, Patterns, RAINBOWR, RSSL, RaceID, SNPfiltR, SOMMD, SPARTAAS, SVEMnet, SampleCore, SemanticDistance, SensoMineR, Seurat, SillyPutty, SimuRg, SlideCNA, SparseFunClust, SpectralClMixed, StatDA, TML, TcGSA, TraMineR, TraMineRextras, TreeSearch, VIProDesign, WCluster, WOAkMedoids, WebGestaltR, Xplortext, YEAB, aPCoA, adiv, admetshiny, agricolae, anocva, aqp, ascent, aweSOM, bayesics, beadplexr, binspp, biopixR, bioregion, bipl5, biplotbootGUI, bootcluster, boxplotcluster, brsim, cati, cclustr, chooseGCM, classmap, clhs, clue, clusEvol, clustMixType, clustTMB, clusterWebApp, clusterability, clusterv, clustrd, cmAnalysis, cobiclust, comato, condvis2, conjoint, copula, craftgrn, cstab, ctgimme, dPCP, daltoolbox, dbrobust, disclapmix, disclapmix2, discoveR, drclust, dtwclust, ecan, etree, factoextra, fdacluster, fpc, funIHC, funrar, gbif.range, glmmfields, grouper, hetcorFS, hmer, iClusterVB, iSubGen, ideanet, immunaut, inpdfr, ipft, isopam, jackstraw, jrSiCKLSNMF, labdsv, lakemorpho, lazytrade, leapgp, mFD, makePalette, manydist, maotai, mastif, mditools, metaCluster, metasnf, mlr3cluster, monoClust, mosclust, multibiplotGUI, mutSignatures, netOP, nhscancerwaits, nncc, norMmix, oompaBase, opGMMassessment, openSkies, openair, opencesp, pamr, pavo, phylosignalDB, phynotype, piglet, pivmet, predReliability, puls, qcluster, qrfactor, r4pde, rEMM, rainbow, randomUniformForest, randomcoloR, rassta, recluster, relations, rms, rmsb, rnmamod, robCompositions, rrcovNA, sClust, scDHA, scISR, scellpam, sdcMicro, sejmRP, semtree, seqimpute, seriation, sharpshootR, skmeans, speaq, spikeSlabGAM, stIHC, statGraph, stemmatology, stream, symbolicDA, tidydr, tidylearn, tidyvpc, tna, traj, treeheatr, truh, ulrb, unsurv, vegan, vegan3d, visxhclust, wdiexplorer, wordspace.

Depended on by BoutrosLab.plotting.general, ClassDiscovery, ClusterStability, CoImp, GLDEX, ICGE, IntNMF, KQM, MOCCA, NMF, NU.Learning, PAMhm, RPMM, WeightedCluster, abodOutlier, bios2mds, briKmeans, clValid, clustEff, clusterSim, convevol, dbstats, divo, gclus, maptree, nomclust, saccadr, treeClust.

Suggested by ARTool, AnthropMMD, BarcodingR, BiodiversityR, CEDMr, CircularSilhouette, CohortContrast, DataSimilarity, DiversityStats, DrData, ELAplus, Evacluster, FCPS, HKRbook, MSCA, MachineShop, MapperAlgo, MoEClust, QuadratiK, R2HTML, REN, REdaS, RGraphics, RRphylo, RelativeDistClust, SCpubr, Silhouette, TextAnalysisR, TreeDist, acR, agriutilities, biplotEZ, broom, clayringsmiletus, condvis, cordillera, dendextend, depictr, diceR, e1071, earthtones, familiar, fdm2id, flexclust, flextable, fwtraits, ggdendro, ggfortify, goeveg, gp3sequences, gp3tools, grImport, hilldiv3, idendr0, inaparc, kamila, ksharp, languageR, latrend, mdendro, mlr, mlr3viz, moRphomenses, naspaclust, nexus, nor1mix, parallelpam, parameters, pdfCluster, plotthis, ppclust, ppmSuite, randomForestSRC, rankimp, rattle, robustbase, robustfa, sageR, scorepeak, seqhandbook, sfsmisc, sharp, sigminer, sjPlot, sociome, spacc, spatialEco, tclust, tensorsparse, tidyclust, toscca, vizClust.

Enhanced by MixSim.


See at CRAN